[ FunGenePipeline | FunGene | RDPipeline | RDP ]
Sample Abundance Statistics
Input 1: RDP Cluster file and range of cutoffs to compute sample abundance statistics;
Input 2: Column format similar to SPADE; one sample per column, one species per row, first row may contain sample names.
Uses Chao abundance correction (Chao et al., 2006).
- Jaccard & Sørensen distance matrix in tabular format with row and column headers (separate files) (view sample)
- Jaccard & Sørensen Tree (view sample) and heatmap (view sample) generated with R Statistical Computing Package (UPGMA)