Functional Gene Pipeline and Repository

FunGenePipeline | FunGene | RDPipeline | RDP ]

FunGene Pipeline


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Pipeline


Pipeline Tools:

If you use RDP's FunGene, please cite:
Fish, J. A., B. Chai, Q. Wang, Y. Sun, C. T. Brown, J. M. Tiedje, and J. R. Cole (2013).
FunGene: the Functional Gene Pipeline and Repository. Front. Microbiol. 4: 291.

Note: If you experience problems with the pyrosequencing pipeline, please contact us and we will help you get your sequences processed.

Fungene News

11/10/2017  myRDP login problem fixed!

05/16/2017  Apology for slow/NO connection to RDP tools today
Thanks to Alex/Brian, etc. for working things out in the server room

05/10/2017  RDP Director at GSC 19, May 14-17
Genomic Standards Consortium Meeting, Brisbane, Queensland, Australia

05/10/2017  Possible Friday, May 12, morning interruptions
Emergency Generator Testing from 9-10 A.M.

12/13/2016  Most Highly Cited Researchers
Congratulations to RDP Director James Cole

09/30/2016  RDP Release 11.5 available
Updated 16S rRNA training set to training set No. 16.

08/16/2016  Possible Friday morning interruptions
Building electrical testing/maintenance

06/30/2016  RDP Classifier Updates
The Classifier 16S training set and Fungal ITS Warcup set have been updated

06/03/2016  RDP staff on the road!
Teaching in China, Genomic Standards Consortium meeting in Crete, special ASM Microbe events in Boston

10/07/2015  Xander assembler article is published.
Xander: Employing a Novel Method for Efficient Gene-Targeted Metagenomic Assembly