Functional Gene Pipeline and Repository

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FunGene Pipeline

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Pipeline Tools:

If you use RDP's FunGene, please cite:
Fish, J. A., B. Chai, Q. Wang, Y. Sun, C. T. Brown, J. M. Tiedje, and J. R. Cole (2013).
FunGene: the Functional Gene Pipeline and Repository. Front. Microbiol. 4: 291.

Note: If you experience problems with the pyrosequencing pipeline, please contact us and we will help you get your sequences processed.

Fungene News

03/26/2014  Informatics Professional job opening at RDP
Work with a team developing important bioinformatics resources.

03/19/2014  All services should be back online!
Sorry for the interruption.

03/19/2014  RDP Site Issues
Some services temporarily unavailable.

03/07/2014  RDP Release 11.2
RDP Release 11.2 features updated Fungal 28S LSU hierarchy model

11/08/2013  Fungene Repository Release 7.3
Release 7.3 of the Functional Gene Repository is now live at This release includes a new gene, nxrB, and updated with ...

10/16/2013  RDP 11 and RDPipeline are now live
RDP 11 and the new RDP Pipeline for Amplicon Sequences (RDPipeline) are now live and available to researchers.

10/16/2013  RDP 11 Major Release Tonight
RDP sites will be down this evening for new release deployment

10/09/2013  FunGene article published
The article describing our FunGene data and tools is published in Frontier in Microbiolgy.

10/09/2013  RDP FrameBot article published
The article describing RDP FrameBot (a frameshift correction tool) is published in the journal mBio

10/01/2013  RDP Staff and Poster
5th Argonne Soil Metagenomics Meeting