Functional Gene Pipeline and Repository

FunGenePipeline | FunGene | RDPipeline | RDP ]

FunGene Pipeline

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Pipeline Tools:

If you use RDP's FunGene, please cite:
Fish, J. A., B. Chai, Q. Wang, Y. Sun, C. T. Brown, J. M. Tiedje, and J. R. Cole (2013).
FunGene: the Functional Gene Pipeline and Repository. Front. Microbiol. 4: 291.

Note: If you experience problems with the pyrosequencing pipeline, please contact us and we will help you get your sequences processed.

Fungene News

09/17/2014  Using RDPTools Output with Phyloseq
A comprehensive tutorial using RDPTools output with Phyloseq package released

09/17/2014  RDP Release 11.3 available
RDP Release 11.3 features updated 16S rRNA hierarchy model

07/08/2014  UNITE Fungal ITS Classifier training set released
Available on RDP Classifier site, RDP SourceForge and GitHub repository.

07/02/2014  BIOM format support
RDP provides support for BIOM format files

07/01/2014  New Warcup Fungal ITS training set released.
Available on RDP Classifier site, RDP SourceForge and GitHub repository.

06/06/2014  RDP staff at MSA meeting, East Lansing MI
Poster about Fungal Analysis

05/23/2014  Informatics Professional job opening at RDP
Work with a team developing important bioinformatics resources.

05/16/2014  Tree Builder Java applet fix in the works
Some problems displaying and interacting with Tree Builder results have been addressed

05/16/2014  RDP staff at ASM, Boston
Poster at 10:45 Sun. morning; ASMCUE workshop info online

05/14/2014  The RDP Paired-end Reads Assembler
The RDP Paired-end Reads Assembler is available for download at RDP Resources page